Variant report

Variant	rs9820612
Chromosome Location	chr3:25131344-25131345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1104724	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12486699	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13072262	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13325558	0.87[AFR][1000 genomes]
rs1587427	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1587431	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1603988	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1603989	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1603990	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1603991	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1609491	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1609936	0.82[EUR][1000 genomes]
rs1609938	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2012334	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4568087	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4858141	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4858142	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858699	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4858700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858701	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4858704	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6550947	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6776699	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6797206	0.84[AFR][1000 genomes]
rs7628200	0.99[EUR][1000 genomes]
rs7630907	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9827724	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9864928	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25128000-25131600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:25129600-25131400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:25129600-25131800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:25130000-25131800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:25130000-25138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:25130200-25131400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:25130200-25134800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:25130400-25131400	Weak transcription	Fetal Lung	lung
9	chr3:25130600-25133600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:25131000-25131600	Enhancers	HUES6 Cell Line	embryonic stem cell

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