Variant report

Variant	rs1603989
Chromosome Location	chr3:25118874-25118875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25115105..25117289-chr3:25117936..25120330,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1104724	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12486699	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12629972	0.84[ASN][1000 genomes]
rs13072262	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1587427	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1587431	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1603988	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1603990	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1603991	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1609491	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1609936	0.83[EUR][1000 genomes]
rs1609938	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2012334	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4568087	1.00[EUR][1000 genomes]
rs4858141	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858142	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4858699	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858700	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4858701	1.00[EUR][1000 genomes]
rs4858704	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6550947	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6776699	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6797206	0.83[AFR][1000 genomes]
rs6801041	0.81[AFR][1000 genomes]
rs7429279	0.86[ASN][1000 genomes]
rs7626290	0.82[AFR][1000 genomes]
rs7628200	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7630907	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9820612	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9827724	1.00[EUR][1000 genomes]
rs9864928	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs993805	0.81[AFR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25117000-25127800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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