Variant report

Variant	rs1104724
Chromosome Location	chr3:25135109-25135110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25132774..25135681-chr3:25139288..25142091,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12486699	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13072262	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1587427	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1587431	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1603988	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1603989	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1603990	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1603991	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1609491	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1609936	0.81[EUR][1000 genomes]
rs1609938	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2012334	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4568087	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858141	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858142	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858699	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858700	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858701	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858704	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6550947	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6776699	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6801041	0.91[AFR][1000 genomes]
rs7628200	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7630907	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9820612	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9827724	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9864928	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25130000-25138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:25134400-25135200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:25134600-25135600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:25134800-25135200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:25135000-25135400	Enhancers	H1 Cell Line	embryonic stem cell

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