Variant report

Variant	rs12486699
Chromosome Location	chr3:25125530-25125531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1104724	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13072262	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1587427	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1587431	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1603988	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1603989	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1603990	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1603991	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609491	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1609936	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1609938	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2012334	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4568087	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4858141	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4858142	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4858699	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858700	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4858701	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4858704	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6550947	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6776699	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7429279	0.85[ASN][1000 genomes]
rs7626290	0.85[AFR][1000 genomes]
rs7628200	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7630907	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9820612	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9827724	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9864928	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs992844	0.81[AFR][1000 genomes]
rs993805	0.83[AFR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25117000-25127800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:25125400-25125800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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