Variant report

Variant	rs62232753
Chromosome Location	chr22:33016853-33016854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33014781..33017660-chr22:33019637..33021375,2	MCF-7	breast:
2	chr22:33016718..33020351-chr22:33021844..33025503,4	K562	blood:
3	chr22:33015941..33022634-chr22:33022783..33027992,6	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16990836	0.85[EUR][1000 genomes]
rs17700898	0.82[EUR][1000 genomes]
rs17774399	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3788467	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5994594	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60378048	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60744960	0.82[EUR][1000 genomes]
rs62232746	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62232752	0.81[EUR][1000 genomes]
rs62232754	0.86[EUR][1000 genomes]
rs62234572	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73154348	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1061824	chr22:33013014-33101138	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33010400-33017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:33012400-33017600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr22:33012400-33017800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33012400-33018400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:33012600-33017000	Weak transcription	Lung	lung
6	chr22:33012600-33017400	Weak transcription	Fetal Heart	heart
7	chr22:33012800-33017600	Enhancers	HepG2	liver
8	chr22:33014200-33017800	Weak transcription	Brain Anterior Caudate	brain
9	chr22:33014200-33022200	Weak transcription	Small Intestine	intestine
10	chr22:33014400-33017000	Weak transcription	Psoas Muscle	Psoas
11	chr22:33014400-33017400	Weak transcription	Colonic Mucosa	Colon
12	chr22:33014400-33017400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr22:33014400-33019800	Weak transcription	Brain Angular Gyrus	brain
14	chr22:33014600-33017000	Weak transcription	Fetal Kidney	kidney
15	chr22:33014600-33017600	Weak transcription	Brain Hippocampus Middle	brain
16	chr22:33014600-33017600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr22:33014800-33017000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr22:33014800-33017400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr22:33014800-33017600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr22:33015000-33017200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr22:33015000-33017400	Weak transcription	Right Ventricle	heart
22	chr22:33015000-33017400	Weak transcription	Stomach Mucosa	stomach
23	chr22:33015000-33019800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr22:33015200-33017000	Weak transcription	Placenta	Placenta
25	chr22:33015200-33017600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr22:33015800-33017000	Weak transcription	Adipose Nuclei	Adipose
27	chr22:33015800-33017000	Weak transcription	Fetal Lung	lung
28	chr22:33015800-33017000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr22:33015800-33017000	Weak transcription	Spleen	Spleen
30	chr22:33015800-33017200	Weak transcription	Ovary	ovary
31	chr22:33015800-33017400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr22:33015800-33017400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr22:33015800-33017600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr22:33015800-33017800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr22:33016000-33017000	Weak transcription	Right Atrium	heart
36	chr22:33016000-33017400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr22:33016000-33017600	Weak transcription	K562	blood
38	chr22:33016000-33020000	Weak transcription	Liver	Liver
39	chr22:33016400-33017000	Weak transcription	Fetal Muscle Leg	muscle
40	chr22:33016600-33017000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr22:33016600-33017000	Weak transcription	Left Ventricle	heart
42	chr22:33016600-33017000	Weak transcription	Hela-S3	cervix

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