Variant report

Variant	rs73154348
Chromosome Location	chr22:33011147-33011148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16990836	0.89[EUR][1000 genomes]
rs17700898	0.86[EUR][1000 genomes]
rs17774399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3788467	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5994594	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5998562	0.84[AMR][1000 genomes]
rs60378048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60966625	0.81[EUR][1000 genomes]
rs62232746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62232753	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62232754	0.82[EUR][1000 genomes]
rs62234572	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33004000-33011600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr22:33004000-33011600	Weak transcription	Placenta	Placenta
3	chr22:33004000-33011800	Weak transcription	Left Ventricle	heart
4	chr22:33004000-33012600	Weak transcription	Fetal Lung	lung
5	chr22:33010200-33011800	Weak transcription	Fetal Heart	heart
6	chr22:33010200-33012400	Weak transcription	Spleen	Spleen
7	chr22:33010400-33011600	Weak transcription	Fetal Muscle Leg	muscle
8	chr22:33010400-33011800	Weak transcription	Lung	lung
9	chr22:33010400-33013000	Weak transcription	Fetal Kidney	kidney
10	chr22:33010400-33017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:33010600-33011400	Weak transcription	Fetal Stomach	stomach
12	chr22:33010600-33011600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr22:33010600-33011800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr22:33010600-33012000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr22:33010600-33012000	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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