Variant report

Variant	rs62232923
Chromosome Location	chr22:33240962-33240963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33240468..33242609-chr22:33255159..33257901,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183531	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62232917	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3599	chr22:33230106-33274789	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33217800-33248600	Weak transcription	Gastric	stomach
2	chr22:33222600-33258800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr22:33227000-33272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr22:33227600-33248800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:33227600-33249400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr22:33227800-33252200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr22:33227800-33253200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr22:33228000-33245000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:33228000-33252200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr22:33228000-33252600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr22:33231200-33245400	Weak transcription	NHLF	lung
12	chr22:33232400-33245600	Weak transcription	HSMMtube	muscle
13	chr22:33235200-33243800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:33235400-33241600	Weak transcription	Esophagus	oesophagus
15	chr22:33235600-33245200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr22:33235800-33241800	Weak transcription	Colonic Mucosa	Colon
17	chr22:33236200-33241800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr22:33236200-33241800	Strong transcription	Osteobl	bone
19	chr22:33236200-33245600	Weak transcription	Aorta	Aorta
20	chr22:33236200-33253800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr22:33236200-33259000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr22:33236400-33244200	Enhancers	Right Atrium	heart
23	chr22:33237000-33242600	Weak transcription	Ovary	ovary
24	chr22:33237000-33245600	Weak transcription	Fetal Intestine Small	intestine
25	chr22:33237400-33241400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr22:33237400-33241600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr22:33237400-33241600	Weak transcription	Colon Smooth Muscle	Colon
28	chr22:33237400-33245600	Weak transcription	Fetal Intestine Large	intestine
29	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
30	chr22:33237600-33241600	Weak transcription	Brain Hippocampus Middle	brain
31	chr22:33237600-33242200	Weak transcription	Fetal Lung	lung
32	chr22:33237800-33242000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr22:33238200-33241400	Weak transcription	Placenta	Placenta
34	chr22:33238400-33259200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr22:33238600-33242000	Enhancers	Fetal Heart	heart
36	chr22:33238600-33242600	Weak transcription	Fetal Kidney	kidney
37	chr22:33238800-33244800	Weak transcription	NH-A	brain
38	chr22:33239000-33242400	Weak transcription	NHEK	skin
39	chr22:33239000-33245600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr22:33239000-33246200	Weak transcription	NHDF-Ad	bronchial
41	chr22:33239000-33248800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr22:33239200-33241600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr22:33239200-33243400	Enhancers	Brain Anterior Caudate	brain
44	chr22:33239200-33248400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr22:33239400-33241600	Weak transcription	HMEC	breast
46	chr22:33239600-33241400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr22:33239600-33241600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr22:33239600-33241600	Weak transcription	HepG2	liver
49	chr22:33239600-33242200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr22:33239600-33243200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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