Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11129009	0.93[EUR][1000 genomes]
rs11713447	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11714683	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13068076	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13068431	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13068965	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13092094	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13099530	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28369086	0.93[EUR][1000 genomes]
rs28625100	0.95[EUR][1000 genomes]
rs34323566	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35104803	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62236078	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62236079	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550611	0.87[EUR][1000 genomes]
rs6550612	0.84[EUR][1000 genomes]
rs73033316	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821724	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9822059	0.80[EUR][1000 genomes]
rs9827481	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9833976	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9841949	0.80[EUR][1000 genomes]
rs9859649	0.80[EUR][1000 genomes]
rs9877267	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426590	chr3:21593997-21613071	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21593000-21606800	Weak transcription	K562	blood
2	chr3:21596400-21606800	Weak transcription	Psoas Muscle	Psoas
3	chr3:21599600-21607000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:21600800-21606800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:21600800-21607000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:21603200-21634400	Weak transcription	Left Ventricle	heart
7	chr3:21604000-21608200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:21605400-21609000	Weak transcription	Aorta	Aorta
9	chr3:21605600-21607200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:21605600-21617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:21606600-21608600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: