Variant report

Variant	rs62239049
Chromosome Location	chr22:32628900-32628901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12158446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12158679	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17759199	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28633446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239009	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62239026	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62239035	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239036	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239037	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239038	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239052	1.00[AMR][1000 genomes]
rs62239053	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62239055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239057	1.00[AMR][1000 genomes]
rs62239058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7292337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1065175	chr22:32467617-32761093	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv544680	chr22:32467617-32761093	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv2830423	chr22:32477718-32767825	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv2422247	chr22:32486448-32788258	Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv834178	chr22:32490449-32677521	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
8	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
9	nsv3597	chr22:32588424-32632724	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv2753006	chr22:32592120-32719481	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32614800-32629000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr22:32623800-32633800	Weak transcription	Fetal Intestine Small	intestine
3	chr22:32625000-32629400	Strong transcription	Duodenum Mucosa	Duodenum
4	chr22:32627200-32629400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr22:32628000-32629200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr22:32628000-32630200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr22:32628400-32629000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr22:32628400-32629600	Enhancers	Brain Substantia Nigra	brain
9	chr22:32628400-32630200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr22:32628600-32629600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr22:32628600-32629600	Enhancers	Brain Cingulate Gyrus	brain
12	chr22:32628600-32629600	Enhancers	Brain Hippocampus Middle	brain
13	chr22:32628600-32634800	Weak transcription	Spleen	Spleen
14	chr22:32628800-32629200	Enhancers	Brain Angular Gyrus	brain
15	chr22:32628800-32629400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr22:32628800-32629600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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