Variant report

Variant	rs62239056
Chromosome Location	chr22:32642424-32642425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32637360-32651094..22:32860159-32865649	K562	blood:
2	22:32637360-32651094..22:33339333-33353583	K562	blood:
3	22:32637360-32651094..22:32740683-32750950	K562	blood:
4	22:31864703-31891033..22:32637360-32651094	H1-hESC	embryonic stem cell:	embryo
5	22:32637360-32651094..22:33452523-33459358	K562	blood:
6	22:32228866-32235273..22:32637360-32651094	K562	blood:
7	chr22:32642091..32645022-chr22:32646748..32648968,2	K562	blood:
8	22:32637360-32651094..22:32764253-32784733	K562	blood:
9	22:32637360-32651094..22:33190123-33206921	K562	blood:

No data

Variant related genes	Relation type
ENSG00000230736	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000100234	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000252909	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12158446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12158679	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17759199	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28633446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239009	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62239026	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62239035	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239036	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239037	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239038	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239052	1.00[AMR][1000 genomes]
rs62239053	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62239055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239057	1.00[AMR][1000 genomes]
rs62239058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62241067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7292337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1065175	chr22:32467617-32761093	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv544680	chr22:32467617-32761093	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv2830423	chr22:32477718-32767825	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv2422247	chr22:32486448-32788258	Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv834178	chr22:32490449-32677521	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
8	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
9	esv2753006	chr22:32592120-32719481	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32634200-32642800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr22:32634200-32646200	Enhancers	Fetal Intestine Large	intestine
3	chr22:32636000-32646000	Enhancers	Fetal Intestine Small	intestine
4	chr22:32640600-32642600	Enhancers	Duodenum Mucosa	Duodenum
5	chr22:32642400-32643600	Weak transcription	HepG2	liver
6	chr22:32642400-32644600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links