Variant report

Variant	rs62241752
Chromosome Location	chr2:212444197-212444198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212443336..212445425-chr2:212453184..212455748,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11128941	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11128942	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1122135	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486706	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12637234	0.87[EUR][1000 genomes]
rs1567200	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17006682	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17006721	0.88[EUR][1000 genomes]
rs17006733	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17006739	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2292228	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3804568	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3804572	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3811674	0.87[EUR][1000 genomes]
rs4076369	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41276509	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4132121	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858157	0.88[EUR][1000 genomes]
rs4858159	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4858160	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4858770	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4858775	0.88[EUR][1000 genomes]
rs4858776	0.96[EUR][1000 genomes]
rs4858777	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57204823	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58206832	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58371809	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58409904	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58613937	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59189930	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59471185	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60612263	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61206920	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61207556	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61729306	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62241665	0.85[EUR][1000 genomes]
rs62241671	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62241672	0.91[EUR][1000 genomes]
rs62241673	0.92[EUR][1000 genomes]
rs62241699	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62241703	0.88[EUR][1000 genomes]
rs62241706	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62241707	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62241708	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62241714	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62241753	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62241756	0.87[EUR][1000 genomes]
rs62243138	0.87[EUR][1000 genomes]
rs62243461	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62243480	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62243482	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62243502	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62243503	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6550413	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6550419	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550460	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66968685	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67253443	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6761987	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6767445	0.94[EUR][1000 genomes]
rs6770526	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6774000	0.81[EUR][1000 genomes]
rs6774152	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6776870	0.86[EUR][1000 genomes]
rs6777193	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6778969	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782533	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67949984	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68098782	0.95[EUR][1000 genomes]
rs73175302	0.83[AFR][1000 genomes]
rs7620481	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7622992	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7623136	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7640134	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs906468	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs937886	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9832994	0.91[EUR][1000 genomes]
rs9833147	0.80[EUR][1000 genomes]
rs9838186	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9838851	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9845960	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212419400-212451800	Weak transcription	Aorta	Aorta
2	chr2:212435400-212450000	Weak transcription	Fetal Heart	heart
3	chr2:212443200-212444400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links