Variant report

Variant	rs62246092
Chromosome Location	chr3:68683849-68683850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:68683688-68683855	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000212095	TF binding region
ENSG00000244640	TF binding region
PSMC1P1	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11721243	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13321458	0.88[AMR][1000 genomes]
rs13327009	0.90[ASN][1000 genomes]
rs1398063	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1398071	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1553915	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910585	0.85[AMR][1000 genomes]
rs2202334	0.89[AMR][1000 genomes]
rs2203119	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4643714	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73098738	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73098744	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73098747	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73098748	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7432610	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874817	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs874818	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs874819	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs874820	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9810990	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9820828	0.86[AMR][1000 genomes]
rs9820953	0.86[AMR][1000 genomes]
rs9826377	0.89[AMR][1000 genomes]
rs9838903	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9857983	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9858470	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9859225	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9859249	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9860873	0.86[AMR][1000 genomes]
rs9864780	0.86[AMR][1000 genomes]
rs9867258	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9867536	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9867648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872808	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9875703	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68683600-68693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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