Variant report

Variant	rs13327009
Chromosome Location	chr3:68717808-68717809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11721243	0.80[AFR][1000 genomes]
rs1553915	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1910585	0.83[AFR][1000 genomes]
rs2872466	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62246092	0.90[ASN][1000 genomes]
rs6762986	0.80[AMR][1000 genomes]
rs6781321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6806088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73098747	0.80[AFR][1000 genomes]
rs7432610	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9813609	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9826082	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9837907	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9859225	0.80[AFR][1000 genomes]
rs9859249	0.80[AFR][1000 genomes]
rs9867258	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9867648	0.90[ASN][1000 genomes]
rs9872072	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009857	chr3:68696340-68746434	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1007568	chr3:68714009-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1005544	chr3:68715718-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68716400-68719400	Weak transcription	Aorta	Aorta
2	chr3:68716800-68718800	Weak transcription	Fetal Stomach	stomach
3	chr3:68717400-68719000	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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