Variant report

Variant	rs9813609
Chromosome Location	chr3:68719218-68719219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11721243	0.80[AFR][1000 genomes]
rs13315657	0.90[LWK][hapmap]
rs13327009	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1553915	0.81[AFR][1000 genomes]
rs2872466	0.85[AFR][1000 genomes]
rs6781321	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6804831	0.95[LWK][hapmap]
rs6806088	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73098747	0.80[AFR][1000 genomes]
rs7432610	0.83[AFR][1000 genomes]
rs7614404	0.82[AFR][1000 genomes]
rs9310118	0.95[LWK][hapmap]
rs9826082	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9838903	0.81[AFR][1000 genomes]
rs9859225	0.80[AFR][1000 genomes]
rs9859249	0.80[AFR][1000 genomes]
rs9867258	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009857	chr3:68696340-68746434	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1007568	chr3:68714009-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1005544	chr3:68715718-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1820556	chr3:68718875-68747401	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1008984	chr3:68718875-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv998169	chr3:68719218-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9813609	MITF	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68716400-68719400	Weak transcription	Aorta	Aorta
2	chr3:68718800-68719800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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