Variant report

Variant	rs6804831
Chromosome Location	chr3:68590011-68590012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11721243	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13315657	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap]
rs13319937	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs13321458	0.93[AFR][1000 genomes]
rs13434171	1.00[YRI][hapmap]
rs1397251	1.00[YRI][hapmap]
rs1397253	1.00[YRI][hapmap]
rs1398063	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1398071	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1511907	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1553915	0.81[AFR][1000 genomes]
rs169023	1.00[YRI][hapmap]
rs1858372	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1858373	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs187794	1.00[YRI][hapmap]
rs2137182	0.80[CEU][hapmap]
rs2175518	1.00[YRI][hapmap]
rs2202334	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2203119	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs262217	1.00[YRI][hapmap]
rs262232	1.00[YRI][hapmap]
rs4488833	1.00[YRI][hapmap]
rs4643714	0.88[AFR][1000 genomes]
rs6782797	1.00[YRI][hapmap]
rs6809730	0.84[TSI][hapmap]
rs73098738	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73098744	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73098747	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73098748	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73101396	0.83[AFR][1000 genomes]
rs7432610	0.83[AFR][1000 genomes]
rs7623705	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7634667	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs874817	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs874818	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs874819	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs874820	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9310118	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9810990	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9820828	0.90[AFR][1000 genomes]
rs9820953	0.81[AFR][1000 genomes]
rs9826377	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9835386	0.85[AFR][1000 genomes]
rs9838903	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9857983	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9858470	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9859225	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9859249	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9860873	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9864780	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9867056	1.00[YRI][hapmap]
rs9867536	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9872808	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9875703	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6804831	RYBP	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68589800-68590400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:68590000-68590400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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