Variant report

Variant	rs6809730
Chromosome Location	chr3:68596207-68596208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13071343	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs13315657	0.91[TSI][hapmap]
rs2137182	0.83[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.82[TSI][hapmap]
rs6770575	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs6804831	0.84[TSI][hapmap]
rs6810150	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs7431217	0.87[CEU][hapmap]
rs7620676	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9310118	0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1828578	chr3:68595321-68641509	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6809730	RYBP	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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