Variant report

Variant	rs13315657
Chromosome Location	chr3:68598520-68598521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11721243	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs13319937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes]
rs13321458	0.89[AFR][1000 genomes]
rs1398063	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1398064	0.82[TSI][hapmap]
rs1398071	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1511907	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1858372	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1858373	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1910585	0.84[ASN][1000 genomes]
rs2137182	0.82[GIH][hapmap];0.86[TSI][hapmap]
rs2202334	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2203119	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4643714	0.84[AFR][1000 genomes]
rs6804831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6809730	0.91[TSI][hapmap]
rs73098738	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73098744	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73098747	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73098748	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7623705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7634667	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs874817	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs874818	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs874819	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs874820	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9310118	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9810990	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9820828	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9820953	0.84[ASN][1000 genomes]
rs9826377	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9835386	0.82[AFR][1000 genomes]
rs9838903	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9857983	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9858470	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9859225	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9859249	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9860873	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9864780	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9867536	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9872808	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9875703	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1828578	chr3:68595321-68641509	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13315657	RYBP	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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