Variant report

Variant	rs9835386
Chromosome Location	chr3:68610847-68610848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11721243	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13315657	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.81[MKK][hapmap]
rs13319937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13321458	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13434171	1.00[YRI][hapmap]
rs1397251	1.00[YRI][hapmap]
rs1397253	1.00[YRI][hapmap]
rs1398063	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1398065	0.86[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap]
rs1398071	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1511907	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1553915	0.80[AFR][1000 genomes]
rs1858372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1858373	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2175518	1.00[YRI][hapmap]
rs2202334	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2203119	0.85[AFR][1000 genomes]
rs262232	1.00[YRI][hapmap]
rs4488833	1.00[YRI][hapmap]
rs4643714	0.87[AFR][1000 genomes]
rs6782797	1.00[YRI][hapmap]
rs6804831	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs73098738	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73098744	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73098747	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73098748	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73101396	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432610	0.83[AFR][1000 genomes]
rs7623705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7634667	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs874817	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs874818	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs874819	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs874820	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9310118	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9810990	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9820828	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9820953	0.84[EUR][1000 genomes]
rs9826377	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9838903	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9857983	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9858470	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9859225	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9859249	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9860873	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9864780	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9867056	1.00[YRI][hapmap]
rs9867536	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9872808	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9875703	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1828578	chr3:68595321-68641509	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv508223	chr3:68603630-68645355	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv3862	chr3:68608012-68653563	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9835386	RYBP	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68610000-68612000	Enhancers	Fetal Lung	lung

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