Variant report

Variant	rs13434171
Chromosome Location	chr3:68581012-68581013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1022184	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11713541	0.81[CEU][hapmap]
rs11718412	0.80[AMR][1000 genomes]
rs13319937	1.00[YRI][hapmap]
rs1397249	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1397250	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1397251	1.00[YRI][hapmap]
rs1397253	1.00[YRI][hapmap]
rs1510362	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1510365	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs169023	1.00[YRI][hapmap]
rs1858372	1.00[YRI][hapmap]
rs1858373	1.00[YRI][hapmap]
rs187794	1.00[YRI][hapmap]
rs2137178	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2175518	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2202978	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs262217	1.00[YRI][hapmap]
rs262232	1.00[YRI][hapmap]
rs2665529	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2665534	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs2665544	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4488833	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6764527	0.84[ASN][1000 genomes]
rs6765886	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs6782797	1.00[YRI][hapmap]
rs6801032	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs6804831	1.00[YRI][hapmap]
rs7614996	1.00[YRI][hapmap]
rs7623705	1.00[YRI][hapmap]
rs7634667	1.00[YRI][hapmap]
rs9310118	1.00[YRI][hapmap]
rs9867056	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68580200-68581600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:68580200-68582000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:68580400-68581400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:68580400-68581600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:68580400-68582000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:68580400-68585400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:68580400-68585600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:68580600-68581800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:68580600-68582200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:68580600-68582600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:68581000-68581600	Enhancers	HUES64 Cell Line	embryonic stem cell

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