Variant report
| Variant | rs1397251 |
|---|---|
| Chromosome Location | chr3:68561472-68561473 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10155009 | 0.86[CHB][hapmap] |
| rs1022184 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11713541 | 1.00[CEU][hapmap] |
| rs13319937 | 1.00[YRI][hapmap] |
| rs13434171 | 1.00[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs1397249 | 0.84[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1397250 | 0.84[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1397253 | 0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap] |
| rs1491743 | 0.85[CHB][hapmap] |
| rs1491756 | 0.86[CHB][hapmap] |
| rs1491757 | 0.86[CHB][hapmap] |
| rs1510362 | 1.00[CEU][hapmap] |
| rs1510365 | 0.84[CEU][hapmap] |
| rs169023 | 0.86[CHB][hapmap];1.00[YRI][hapmap] |
| rs1858372 | 1.00[YRI][hapmap] |
| rs1858373 | 1.00[YRI][hapmap] |
| rs187794 | 0.86[CHB][hapmap];1.00[YRI][hapmap] |
| rs2137178 | 0.85[CEU][hapmap] |
| rs2175518 | 0.85[CEU][hapmap];1.00[YRI][hapmap] |
| rs2202978 | 0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs262217 | 1.00[YRI][hapmap] |
| rs262232 | 0.86[CHB][hapmap];1.00[YRI][hapmap] |
| rs2665529 | 0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2665534 | 0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2665544 | 0.84[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4378971 | 0.82[CHB][hapmap] |
| rs4488833 | 0.85[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6549116 | 0.86[CHB][hapmap] |
| rs6764527 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6765886 | 0.81[AMR][1000 genomes] |
| rs6770136 | 0.86[CHB][hapmap] |
| rs6782797 | 0.86[JPT][hapmap];1.00[YRI][hapmap] |
| rs6783358 | 0.86[CHB][hapmap] |
| rs6790906 | 0.84[AMR][1000 genomes] |
| rs6801032 | 0.85[CEU][hapmap] |
| rs6804831 | 1.00[YRI][hapmap] |
| rs7614996 | 0.86[CHB][hapmap];1.00[YRI][hapmap] |
| rs7623705 | 1.00[YRI][hapmap] |
| rs7634667 | 1.00[YRI][hapmap] |
| rs9310118 | 1.00[YRI][hapmap] |
| rs9867056 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1832396 | chr3:68478762-68641509 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv876929 | chr3:68508137-68565824 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
