Variant report

Variant	rs6790906
Chromosome Location	chr3:68525376-68525377
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1022184	0.87[AMR][1000 genomes]
rs1397249	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1397250	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1858242	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2202978	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2665529	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2665534	0.82[AMR][1000 genomes]
rs2665544	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4082810	0.87[AMR][1000 genomes]
rs4488833	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6764527	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6765886	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68523000-68531600	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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