Variant report

Variant	rs4488833
Chromosome Location	chr3:68549959-68549960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:68548311..68550713-chr3:68552898..68555029,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1022184	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11713541	0.88[CEU][hapmap]
rs13319937	1.00[YRI][hapmap]
rs13434171	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1397249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1397250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1397251	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs1397253	1.00[YRI][hapmap]
rs1510362	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1510365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs169023	1.00[YRI][hapmap]
rs1858242	0.85[EUR][1000 genomes]
rs1858372	1.00[YRI][hapmap]
rs1858373	1.00[YRI][hapmap]
rs187794	1.00[YRI][hapmap]
rs2137178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2175518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2202978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs262217	1.00[YRI][hapmap]
rs262232	1.00[YRI][hapmap]
rs2665529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2665534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2665544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6764527	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6765886	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6782797	1.00[YRI][hapmap]
rs6790906	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6801032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6804831	1.00[YRI][hapmap]
rs7614996	1.00[YRI][hapmap]
rs7623705	1.00[YRI][hapmap]
rs7634667	1.00[YRI][hapmap]
rs9310118	1.00[YRI][hapmap]
rs9867056	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68549600-68550000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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