Variant report

Variant	rs6765886
Chromosome Location	chr3:68508202-68508203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:68506304..68508381-chr3:68512161..68513963,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1022109	0.90[JPT][hapmap]
rs1022184	0.83[AMR][1000 genomes]
rs1039879	0.90[JPT][hapmap]
rs11713541	0.81[CEU][hapmap]
rs13434171	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs1397249	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1397250	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1510352	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1510362	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1510365	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1858241	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1858242	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2137178	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2175518	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2202978	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2665529	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2665534	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2665544	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4082810	0.81[AMR][1000 genomes]
rs4488833	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6764527	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6782501	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6782797	0.81[AMR][1000 genomes]
rs6790906	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6801032	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9867056	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68507200-68508400	Enhancers	Fetal Stomach	stomach
2	chr3:68507400-68509200	Enhancers	NHDF-Ad	bronchial
3	chr3:68507800-68508400	Enhancers	Fetal Lung	lung
4	chr3:68508200-68508400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:68508200-68508400	Enhancers	NHLF	lung

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