Variant report

Variant	rs1858242
Chromosome Location	chr3:68527135-68527136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1397249	0.81[EUR][1000 genomes]
rs1397250	0.81[EUR][1000 genomes]
rs2202978	0.85[EUR][1000 genomes]
rs2665529	0.84[EUR][1000 genomes]
rs2665544	0.81[EUR][1000 genomes]
rs4488833	0.85[EUR][1000 genomes]
rs6764527	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6765886	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6790906	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68523000-68531600	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:68527000-68527400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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