Variant report
| Variant | rs6782797 |
|---|---|
| Chromosome Location | chr3:68480290-68480291 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1022109 | 0.88[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes] |
| rs1039879 | 0.91[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes] |
| rs13319937 | 1.00[YRI][hapmap] |
| rs13434171 | 1.00[YRI][hapmap] |
| rs1397251 | 0.86[JPT][hapmap];1.00[YRI][hapmap] |
| rs1397253 | 1.00[ASW][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.83[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs169023 | 1.00[YRI][hapmap] |
| rs1858372 | 1.00[YRI][hapmap] |
| rs1858373 | 1.00[YRI][hapmap] |
| rs187794 | 1.00[YRI][hapmap] |
| rs2055849 | 0.89[AMR][1000 genomes] |
| rs2175518 | 1.00[YRI][hapmap] |
| rs2202978 | 0.81[MKK][hapmap] |
| rs262217 | 1.00[YRI][hapmap] |
| rs262232 | 0.82[ASW][hapmap];1.00[YRI][hapmap] |
| rs4488833 | 1.00[YRI][hapmap] |
| rs4855475 | 0.87[MEX][hapmap] |
| rs6765886 | 0.81[AMR][1000 genomes] |
| rs6804831 | 1.00[YRI][hapmap] |
| rs7614996 | 1.00[YRI][hapmap] |
| rs7623705 | 1.00[YRI][hapmap] |
| rs7634667 | 1.00[YRI][hapmap] |
| rs9310118 | 1.00[YRI][hapmap] |
| rs9867056 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1003779 | chr3:68470899-68517125 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1832396 | chr3:68478762-68641509 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6782797 | SLC25A26 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:68477800-68487400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr3:68480000-68482800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
