Variant report

Variant	rs4855475
Chromosome Location	chr3:68484388-68484389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1022109	0.96[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.81[AMR][1000 genomes]
rs1039879	0.96[LWK][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1510352	0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2055849	0.83[AMR][1000 genomes]
rs4855474	0.87[CHD][hapmap];0.87[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap]
rs4855488	0.86[JPT][hapmap]
rs6782797	0.87[MEX][hapmap]
rs6801913	0.81[JPT][hapmap]
rs7612676	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9852451	0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4855475	SLC25A26	cis	parietal	SCAN
rs4855475	ADAM8	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68477800-68487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68483600-68484400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:68483600-68486200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:68483800-68486200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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