Variant report

Variant	rs62247128
Chromosome Location	chr3:43094116-43094117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13087788	0.81[AFR][1000 genomes]
rs17391070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28655956	0.81[EUR][1000 genomes]
rs4146792	0.90[ASN][1000 genomes]
rs59883679	0.88[ASN][1000 genomes]
rs668271	0.84[ASN][1000 genomes]
rs9815609	0.81[EUR][1000 genomes]
rs9824700	0.81[EUR][1000 genomes]
rs9828785	0.81[EUR][1000 genomes]
rs9840349	0.80[EUR][1000 genomes]
rs9862469	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43085000-43097600	Weak transcription	Ovary	ovary
2	chr3:43085200-43094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:43092200-43101000	Weak transcription	Pancreas	Pancrea
4	chr3:43092400-43096800	Weak transcription	Liver	Liver
5	chr3:43092800-43117800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:43093400-43120200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:43093600-43094800	ZNF genes & repeats	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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