Variant report

Variant	rs4146792
Chromosome Location	chr3:43038237-43038238
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43032109..43034625-chr3:43036764..43039846,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12633357	1.00[EUR][1000 genomes]
rs12637438	1.00[EUR][1000 genomes]
rs12638233	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1427800	0.85[CHB][hapmap];1.00[CHD][hapmap]
rs1427802	0.85[CHB][hapmap]
rs17074839	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17391070	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17842066	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs1863883	1.00[EUR][1000 genomes]
rs1863884	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1875129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2081810	1.00[EUR][1000 genomes]
rs2888273	1.00[EUR][1000 genomes]
rs3732859	1.00[CEU][hapmap]
rs59883679	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62247128	0.90[ASN][1000 genomes]
rs668271	0.84[ASN][1000 genomes]
rs72499008	1.00[EUR][1000 genomes]
rs72872317	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43032600-43040800	Weak transcription	Placenta	Placenta
2	chr3:43033400-43039600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:43034000-43038400	Weak transcription	Esophagus	oesophagus
4	chr3:43034200-43043400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:43036000-43039200	Enhancers	Brain Anterior Caudate	brain
6	chr3:43036800-43038800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:43037000-43038400	Enhancers	Right Atrium	heart
8	chr3:43037000-43039200	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:43037200-43038800	Enhancers	Brain Hippocampus Middle	brain
10	chr3:43037200-43044200	Enhancers	Fetal Muscle Leg	muscle
11	chr3:43037400-43039400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr3:43037400-43039400	Enhancers	Fetal Stomach	stomach
13	chr3:43037600-43038600	Enhancers	Brain Angular Gyrus	brain
14	chr3:43037600-43039200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:43037600-43039400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:43037800-43038600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:43037800-43044600	Enhancers	Liver	Liver
18	chr3:43038000-43038800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:43038000-43038800	Enhancers	Adipose Nuclei	Adipose
20	chr3:43038000-43038800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr3:43038000-43038800	Enhancers	Psoas Muscle	Psoas
22	chr3:43038000-43039600	Enhancers	Ovary	ovary
23	chr3:43038000-43039600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr3:43038000-43040000	Enhancers	Rectal Smooth Muscle	rectum
25	chr3:43038200-43038400	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr3:43038200-43038400	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:43038200-43038600	Enhancers	Pancreas	Pancrea
28	chr3:43038200-43038800	Enhancers	Fetal Muscle Trunk	muscle
29	chr3:43038200-43038800	Enhancers	Lung	lung
30	chr3:43038200-43038800	Enhancers	Right Ventricle	heart
31	chr3:43038200-43039600	Enhancers	Skeletal Muscle Female	skeletal muscle

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