Variant report

Variant	rs12633357
Chromosome Location	chr3:42943975-42943976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12637438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346414	0.97[ASN][1000 genomes]
rs1427800	0.97[ASN][1000 genomes]
rs1427802	0.97[ASN][1000 genomes]
rs17842066	0.81[AMR][1000 genomes]
rs1863883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863884	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875129	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2081810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732859	0.81[AMR][1000 genomes]
rs4146792	1.00[EUR][1000 genomes]
rs4515028	0.97[ASN][1000 genomes]
rs6442121	0.97[ASN][1000 genomes]
rs6801217	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72499008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42939600-42944000	Enhancers	Placenta	Placenta
2	chr3:42940000-42944000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:42940000-42944400	Enhancers	Stomach Mucosa	stomach
4	chr3:42941800-42947400	Weak transcription	Esophagus	oesophagus
5	chr3:42942600-42947600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:42942800-42947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:42943400-42944000	Enhancers	K562	blood
8	chr3:42943600-42944000	Enhancers	Gastric	stomach
9	chr3:42943800-42944200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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