Variant report

Variant	rs17842066
Chromosome Location	chr3:42887680-42887681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:42887339-42888088	MCF10A-Er-Src	breast:	n/a	chr3:42887865-42887876
2	STAT3	chr3:42887370-42888245	MCF10A-Er-Src	breast:	n/a	chr3:42887865-42887876

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42881286..42884459-chr3:42886428..42891439,4	K562	blood:

Variant related genes	Relation type
ACKR2	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10490793	1.00[CEU][hapmap]
rs12633357	0.81[AMR][1000 genomes]
rs12637438	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12638233	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs1346414	1.00[JPT][hapmap]
rs1427800	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1427802	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17074839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1863883	0.81[AMR][1000 genomes]
rs1863884	0.90[AMR][1000 genomes]
rs1875129	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2081810	0.81[AMR][1000 genomes]
rs28544555	1.00[EUR][1000 genomes]
rs2888273	0.81[AMR][1000 genomes]
rs3732859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146792	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs4515028	0.81[ASN][1000 genomes]
rs56970966	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57205235	1.00[EUR][1000 genomes]
rs57780787	1.00[EUR][1000 genomes]
rs59268208	1.00[EUR][1000 genomes]
rs6442121	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs72499008	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42885000-42887800	Enhancers	Stomach Smooth Muscle	stomach
2	chr3:42885000-42888000	Enhancers	HepG2	liver
3	chr3:42885000-42888400	Enhancers	Liver	Liver
4	chr3:42885000-42891200	Enhancers	K562	blood
5	chr3:42885600-42888000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:42885600-42888200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:42885600-42895800	Weak transcription	Aorta	Aorta
8	chr3:42885800-42888400	Weak transcription	Stomach Mucosa	stomach
9	chr3:42886000-42888000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:42886000-42888000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:42886000-42890600	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:42886200-42888600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:42886200-42889000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:42886600-42887800	Weak transcription	Right Ventricle	heart
15	chr3:42886600-42889000	Weak transcription	Lung	lung
16	chr3:42886600-42889200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:42886600-42892000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:42887000-42889000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:42887000-42889600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:42887000-42890000	Enhancers	Placenta	Placenta
21	chr3:42887200-42889600	Enhancers	HSMMtube	muscle
22	chr3:42887400-42888400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:42887400-42888400	Enhancers	Ovary	ovary
24	chr3:42887400-42888600	Enhancers	Rectal Smooth Muscle	rectum
25	chr3:42887400-42888600	Enhancers	HSMM	muscle
26	chr3:42887400-42889000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:42887400-42889400	Enhancers	Adipose Nuclei	Adipose
28	chr3:42887400-42889400	Enhancers	Spleen	Spleen
29	chr3:42887400-42889600	Enhancers	Fetal Muscle Leg	muscle
30	chr3:42887600-42887800	Enhancers	Fetal Kidney	kidney
31	chr3:42887600-42888200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:42887600-42888400	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr3:42887600-42888600	Enhancers	Brain Hippocampus Middle	brain
34	chr3:42887600-42888600	Enhancers	Right Atrium	heart
35	chr3:42887600-42888800	Enhancers	Fetal Heart	heart
36	chr3:42887600-42889000	Enhancers	Fetal Stomach	stomach
37	chr3:42887600-42889000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr3:42887600-42889200	Enhancers	Colon Smooth Muscle	Colon
39	chr3:42887600-42889400	Enhancers	Left Ventricle	heart
40	chr3:42887600-42889600	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr3:42887600-42889600	Enhancers	Fetal Muscle Trunk	muscle

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