Variant report

Variant	rs57780787
Chromosome Location	chr3:42751187-42751188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17842066	1.00[EUR][1000 genomes]
rs28544555	1.00[EUR][1000 genomes]
rs3732859	1.00[EUR][1000 genomes]
rs57205235	1.00[EUR][1000 genomes]
rs59268208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42739200-42751800	Weak transcription	Pancreas	Pancrea
2	chr3:42745600-42753000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:42745800-42752800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:42746200-42753000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:42746600-42752800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:42746800-42752800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:42747400-42752800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:42747600-42751200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:42747800-42760200	Weak transcription	Right Atrium	heart
10	chr3:42748800-42752000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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