Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr3:42927971-42928247	K562	blood:	n/a	n/a
2	GATA3	chr3:42927816-42928143	T-47D	breast:	n/a	n/a
3	MAFK	chr3:42927938-42928199	K562	blood:	n/a	chr3:42928108-42928123

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42925984..42928803-chr3:42932233..42934720,2	K562	blood:

Variant related genes	Relation type
HNRNPA1P22	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12633357	0.97[ASN][1000 genomes]
rs12637438	1.00[ASN][1000 genomes]
rs12638233	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1346413	0.83[EUR][1000 genomes]
rs1346414	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1427800	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427802	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074839	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17842066	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1863883	0.97[ASN][1000 genomes]
rs1863884	0.97[ASN][1000 genomes]
rs1875129	1.00[JPT][hapmap]
rs2081810	0.97[ASN][1000 genomes]
rs2888273	0.97[ASN][1000 genomes]
rs3732859	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4432615	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4515028	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56970966	0.81[ASN][1000 genomes]
rs6789928	0.83[EUR][1000 genomes]
rs6801217	0.97[ASN][1000 genomes]
rs72499008	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv965159	chr3:42927472-42932027	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42923200-42928200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:42923200-42928600	Weak transcription	Fetal Intestine Small	intestine
3	chr3:42924000-42935800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:42925800-42928200	Weak transcription	Placenta	Placenta
5	chr3:42926400-42931800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:42926400-42933000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:42927200-42929400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:42927400-42928200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:42927400-42928200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:42927400-42928600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:42927400-42929000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:42927600-42928400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:42927600-42933200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:42927800-42928200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:42927800-42928200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:42927800-42928600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:42928000-42928200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:42928000-42928200	Enhancers	HMEC	breast
19	chr3:42928000-42929400	Enhancers	Duodenum Mucosa	Duodenum
20	chr3:42928000-42930200	Enhancers	Stomach Mucosa	stomach

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