Variant report

Variant	rs72499008
Chromosome Location	chr3:42927050-42927051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42925984..42928803-chr3:42932233..42934720,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12633357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1346414	0.94[ASN][1000 genomes]
rs1427800	1.00[ASN][1000 genomes]
rs1427802	1.00[ASN][1000 genomes]
rs17074839	0.81[ASN][1000 genomes]
rs17842066	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1863883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1863884	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1875129	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2081810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2888273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3732859	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4146792	1.00[EUR][1000 genomes]
rs4515028	1.00[ASN][1000 genomes]
rs56970966	0.81[ASN][1000 genomes]
rs6442121	1.00[ASN][1000 genomes]
rs6801217	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42923000-42927200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:42923000-42928000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:42923200-42928000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:42923200-42928000	Weak transcription	Stomach Mucosa	stomach
5	chr3:42923200-42928200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:42923200-42928600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:42923400-42927800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:42923600-42927400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:42924000-42935800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:42925800-42927600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:42925800-42928200	Weak transcription	Placenta	Placenta
12	chr3:42926200-42927800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:42926400-42927400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:42926400-42931800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:42926400-42933000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:42926600-42927200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:42926600-42927400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:42926600-42927400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:42926600-42927600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:42926600-42927800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr3:42926600-42928000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links