Variant report

Variant	rs17074839
Chromosome Location	chr3:42874110-42874111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10490793	1.00[CEU][hapmap]
rs12637438	0.81[ASN][1000 genomes]
rs12638233	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs1346414	1.00[JPT][hapmap]
rs1427800	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1427802	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17842066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1875129	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3732859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4146792	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4515028	0.81[ASN][1000 genomes]
rs56970966	1.00[ASN][1000 genomes]
rs6442121	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs72499008	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847016	chr3:42855765-42880490	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42861600-42885400	Weak transcription	Pancreas	Pancrea
2	chr3:42868400-42874200	Enhancers	Liver	Liver
3	chr3:42869400-42877000	Weak transcription	K562	blood
4	chr3:42870600-42874400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:42871200-42885000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:42871400-42877200	Weak transcription	Placenta	Placenta
7	chr3:42871400-42885400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:42872800-42878000	Weak transcription	Fetal Heart	heart
9	chr3:42873200-42880600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:42873200-42883000	Weak transcription	Right Atrium	heart
11	chr3:42873200-42885400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:42873800-42881000	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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