Variant report

Variant	rs62247898
Chromosome Location	chr3:42881032-42881033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:42880952-42881393	K562	blood:	n/a	n/a
2	TBL1XR1	chr3:42880883-42881381	K562	blood:	n/a	n/a
3	CTCF	chr3:42881030-42881499	MCF-7	breast:	n/a	n/a
4	RCOR1	chr3:42881019-42881452	K562	blood:	n/a	n/a
5	CTCF	chr3:42880972-42881474	HCT-116	colon:	n/a	n/a
6	ZC3H11A	chr3:42881001-42881402	K562	blood:	n/a	n/a
7	CTCF	chr3:42880826-42881513	SK-N-SH	brain:	n/a	n/a
8	RAD21	chr3:42880996-42881471	HCT-116	colon:	n/a	chr3:42881285-42881297
9	RCOR1	chr3:42880907-42881384	K562	blood:	n/a	n/a
10	RAD21	chr3:42880658-42881543	SK-N-SH	brain:	n/a	chr3:42881285-42881297
11	CTCF	chr3:42880982-42881559	A549	lung:	n/a	n/a
12	SMC3	chr3:42880844-42881560	SK-N-SH	brain:	n/a	n/a
13	RAD21	chr3:42880957-42881496	HCT-116	colon:	n/a	chr3:42881285-42881297

No.	Distal block	Cell Line	Cell type
1	chr3:42878360..42881223-chr3:42884975..42886514,2	K562	blood:
2	chr3:42822052..42823428-chr3:42880867..42881869,6	K562	blood:
3	chr3:42872464..42873150-chr3:42880873..42881432,2	K562	blood:
4	chr3:42869285..42872521-chr3:42879502..42882815,4	MCF-7	breast:
5	chr3:42843852..42846098-chr3:42879642..42881848,2	MCF-7	breast:

Variant related genes	Relation type
ACKR2	TF binding region
ENSG00000181061	Chromatin interaction
ENSG00000144648	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17239701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247895	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247896	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247903	0.96[EUR][1000 genomes]
rs62247904	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62247908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62247909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62247910	0.98[EUR][1000 genomes]
rs62247911	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9861236	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42861600-42885400	Weak transcription	Pancreas	Pancrea
2	chr3:42871200-42885000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:42871400-42885400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:42873200-42883000	Weak transcription	Right Atrium	heart
5	chr3:42873200-42885400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:42874400-42882800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:42878400-42887600	Weak transcription	Fetal Heart	heart
8	chr3:42880000-42882000	Strong transcription	Placenta	Placenta
9	chr3:42880600-42881200	Enhancers	Brain Anterior Caudate	brain
10	chr3:42880600-42881200	Enhancers	Brain Hippocampus Middle	brain
11	chr3:42880800-42881200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:42880800-42881200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:42880800-42881200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:42880800-42881200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:42880800-42881200	Active TSS	Aorta	Aorta
16	chr3:42880800-42881200	Enhancers	Brain Angular Gyrus	brain
17	chr3:42880800-42881200	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr3:42880800-42881200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:42880800-42881200	Active TSS	Stomach Smooth Muscle	stomach
20	chr3:42880800-42881200	Enhancers	HSMMtube	muscle
21	chr3:42880800-42881200	Flanking Bivalent TSS/Enh	NHDF-Ad	bronchial
22	chr3:42880800-42881200	Active TSS	Osteobl	bone
23	chr3:42880800-42881400	Active TSS	NHLF	lung
24	chr3:42880800-42882000	Active TSS	A549	lung
25	chr3:42880800-42883400	Enhancers	HepG2	liver
26	chr3:42881000-42881200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:42881000-42881200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr3:42881000-42881200	Enhancers	Brain Cingulate Gyrus	brain
29	chr3:42881000-42881200	Flanking Active TSS	Brain Substantia Nigra	brain
30	chr3:42881000-42881200	Enhancers	Colon Smooth Muscle	Colon
31	chr3:42881000-42881200	Enhancers	HSMM	muscle
32	chr3:42881000-42881200	Flanking Active TSS	K562	blood
33	chr3:42881000-42881400	Enhancers	Adipose Nuclei	Adipose
34	chr3:42881000-42881400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr3:42881000-42881400	Enhancers	Fetal Kidney	kidney
36	chr3:42881000-42882000	Enhancers	Primary B cells from peripheral blood	blood
37	chr3:42881000-42887400	Weak transcription	Ovary	ovary

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