Variant report

Variant	rs62247905
Chromosome Location	chr3:42894677-42894678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr3:42893729-42894686	PBDE	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000235288	TF binding region
ACKR2	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17239701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247895	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247896	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247903	0.98[EUR][1000 genomes]
rs62247904	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62247908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62247909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62247910	1.00[EUR][1000 genomes]
rs62247911	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9861236	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42885600-42895800	Weak transcription	Aorta	Aorta
2	chr3:42890200-42897400	Strong transcription	Placenta	Placenta
3	chr3:42890600-42894800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:42891600-42895000	Enhancers	HepG2	liver
5	chr3:42892200-42895600	Enhancers	Fetal Muscle Leg	muscle
6	chr3:42892400-42896000	Enhancers	K562	blood
7	chr3:42892600-42894800	Enhancers	Fetal Muscle Trunk	muscle
8	chr3:42893200-42895400	Enhancers	Fetal Intestine Small	intestine
9	chr3:42893400-42898400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:42893400-42906000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:42893600-42897600	Enhancers	Liver	Liver
12	chr3:42893800-42894800	Flanking Active TSS	HSMMtube	muscle
13	chr3:42893800-42895400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:42893800-42895600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:42894000-42894800	Enhancers	Primary B cells from cord blood	blood
16	chr3:42894000-42895800	Enhancers	Pancreas	Pancrea
17	chr3:42894200-42894800	Enhancers	Primary B cells from peripheral blood	blood
18	chr3:42894200-42894800	Enhancers	Stomach Smooth Muscle	stomach
19	chr3:42894200-42895400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:42894200-42896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:42894200-42896800	Weak transcription	Stomach Mucosa	stomach
22	chr3:42894400-42894800	Enhancers	Right Atrium	heart
23	chr3:42894400-42895400	Weak transcription	HSMM	muscle
24	chr3:42894400-42896800	Weak transcription	Fetal Intestine Large	intestine
25	chr3:42894600-42895400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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