Variant report

Variant	rs62251244
Chromosome Location	chr3:56728043-56728044
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56708568..56710932-chr3:56727678..56729297,2	MCF-7	breast:
2	chr3:56715572..56717883-chr3:56727378..56729582,3	MCF-7	breast:
3	chr3:56716408..56719347-chr3:56726422..56729753,3	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11130522	0.82[EUR][1000 genomes]
rs1388252	0.82[EUR][1000 genomes]
rs1491162	0.82[EUR][1000 genomes]
rs1491167	0.84[ASN][1000 genomes]
rs17216678	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17216712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17216754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4292200	0.84[ASN][1000 genomes]
rs56758331	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57861120	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58457441	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59835031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59897254	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60606369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61456176	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61654248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61747994	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62249737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62251182	0.89[EUR][1000 genomes]
rs62251183	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62251188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251228	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251239	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251240	0.85[EUR][1000 genomes]
rs62251241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62254329	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62255965	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62255966	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62255967	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255969	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255970	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255971	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255972	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255973	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255974	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255977	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255978	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255980	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255981	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256011	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256013	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62256014	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256017	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256018	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256019	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256020	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256022	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62256023	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6810125	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73081816	0.89[EUR][1000 genomes]
rs73081836	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73081850	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083715	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955247	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56725800-56734000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:56726000-56734000	Weak transcription	NHEK	skin
3	chr3:56726200-56729200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:56726400-56729800	Enhancers	Fetal Thymus	thymus
5	chr3:56726600-56729600	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:56726600-56730000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:56726800-56728200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr3:56726800-56728200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:56726800-56729600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:56726800-56729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:56727000-56728200	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr3:56727000-56728200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr3:56727000-56729600	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:56727200-56729600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:56727200-56729800	Enhancers	Thymus	Thymus
16	chr3:56727200-56730000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:56727400-56728200	Enhancers	Duodenum Mucosa	Duodenum
18	chr3:56727400-56728400	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr3:56727600-56728200	Enhancers	HUVEC	blood vessel
20	chr3:56727600-56729600	Enhancers	Primary B cells from cord blood	blood
21	chr3:56727600-56729600	Enhancers	GM12878-XiMat	blood
22	chr3:56727600-56729800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr3:56727600-56730000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr3:56727600-56730400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:56727600-56731000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr3:56727600-56731200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr3:56727600-56731200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:56727800-56728200	Enhancers	Adipose Nuclei	Adipose
29	chr3:56727800-56728400	Enhancers	Lung	lung
30	chr3:56727800-56728400	Enhancers	Spleen	Spleen
31	chr3:56727800-56729400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:56727800-56731000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:56727800-56731200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr3:56728000-56728200	Flanking Active TSS	Dnd41	blood
35	chr3:56728000-56728800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr3:56728000-56730400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr3:56728000-56733000	Weak transcription	Placenta	Placenta

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