Variant report

Variant	rs62251239
Chromosome Location	chr3:56719831-56719832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56715920..56719193-chr3:56719217..56721794,3	K562	blood:
2	chr3:56715920..56718915-chr3:56719704..56721794,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11130522	0.85[EUR][1000 genomes]
rs1388252	0.85[EUR][1000 genomes]
rs1491162	0.85[EUR][1000 genomes]
rs1491167	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17216678	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17216712	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17216754	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288866	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288873	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306930	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306931	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276465	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276467	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276469	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4292200	0.84[ASN][1000 genomes]
rs56758331	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57861120	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58457441	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59835031	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59897254	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60606369	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61456176	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61654248	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61747994	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62249737	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62251182	0.92[EUR][1000 genomes]
rs62251183	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251186	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62251188	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251190	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251193	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251197	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251229	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251230	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251233	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251235	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251238	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251240	0.89[EUR][1000 genomes]
rs62251241	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251244	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251245	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62254329	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62255965	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62255966	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62255967	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255969	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255970	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255971	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255972	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255973	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255974	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255977	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255978	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255980	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255981	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256011	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256013	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62256014	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256017	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256018	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256019	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256020	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256022	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62256023	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782254	0.81[EUR][1000 genomes]
rs6788512	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802548	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6810125	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73081816	0.92[EUR][1000 genomes]
rs73081836	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73081850	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083715	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083725	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635945	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638200	0.81[EUR][1000 genomes]
rs955247	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56717600-56725200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:56717600-56725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:56717800-56720200	Weak transcription	Fetal Lung	lung
4	chr3:56717800-56720800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:56717800-56722000	Weak transcription	Primary B cells from cord blood	blood
6	chr3:56717800-56725200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:56717800-56725200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:56717800-56726800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:56718000-56722000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:56718000-56722200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr3:56718000-56723400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:56718000-56725200	Weak transcription	Dnd41	blood
13	chr3:56718000-56725200	Weak transcription	HMEC	breast
14	chr3:56718000-56727000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:56718000-56727400	Weak transcription	HSMMtube	muscle
16	chr3:56718200-56722400	Weak transcription	NHEK	skin
17	chr3:56718200-56725000	Weak transcription	Placenta	Placenta
18	chr3:56718400-56723400	Weak transcription	HepG2	liver
19	chr3:56718400-56727000	Weak transcription	HSMM	muscle
20	chr3:56718600-56721600	Weak transcription	GM12878-XiMat	blood
21	chr3:56718800-56722200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:56718800-56726600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:56719000-56725800	Weak transcription	Fetal Thymus	thymus
24	chr3:56719600-56722200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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