Variant report

Variant	rs6782254
Chromosome Location	chr3:56564752-56564753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56556169..56557738-chr3:56562979..56565848,2	K562	blood:
2	chr3:56563161..56565156-chr3:56590643..56593162,2	K562	blood:

Variant related genes	Relation type
ENSG00000180376	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11130522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491162	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491167	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17216678	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17216712	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17216754	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17288866	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17288873	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2306930	0.81[EUR][1000 genomes]
rs2306931	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs41276467	0.81[EUR][1000 genomes]
rs41276469	0.81[EUR][1000 genomes]
rs4292200	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56758331	0.89[EUR][1000 genomes]
rs57861120	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58457441	0.89[EUR][1000 genomes]
rs59835031	0.81[EUR][1000 genomes]
rs59897254	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60606369	0.81[EUR][1000 genomes]
rs61456176	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61654248	0.81[EUR][1000 genomes]
rs61747994	0.89[EUR][1000 genomes]
rs62249737	0.89[EUR][1000 genomes]
rs62251182	0.81[EUR][1000 genomes]
rs62251183	0.89[EUR][1000 genomes]
rs62251186	0.81[EUR][1000 genomes]
rs62251188	0.81[EUR][1000 genomes]
rs62251190	0.81[EUR][1000 genomes]
rs62251192	0.81[EUR][1000 genomes]
rs62251197	0.81[EUR][1000 genomes]
rs62251228	0.81[EUR][1000 genomes]
rs62251229	0.81[EUR][1000 genomes]
rs62251230	0.81[EUR][1000 genomes]
rs62251233	0.81[EUR][1000 genomes]
rs62251235	0.81[EUR][1000 genomes]
rs62251238	0.81[EUR][1000 genomes]
rs62251239	0.81[EUR][1000 genomes]
rs62254329	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255965	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255966	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255967	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255969	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255970	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255971	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255972	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255973	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62255977	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62255978	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62255980	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62255981	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62256011	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62256013	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62256014	0.89[EUR][1000 genomes]
rs62256017	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62256018	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62256019	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62256020	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62256022	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62256023	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6788512	0.81[EUR][1000 genomes]
rs6802548	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6810125	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73075746	0.81[EUR][1000 genomes]
rs73081816	0.81[EUR][1000 genomes]
rs73081836	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73081850	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73083715	0.89[EUR][1000 genomes]
rs73083725	0.89[EUR][1000 genomes]
rs955247	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56563400-56566000	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links