Variant report

Variant	rs62253414
Chromosome Location	chr3:24054152-24054153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13326515	1.00[EUR][1000 genomes]
rs62253360	1.00[EUR][1000 genomes]
rs62253386	1.00[EUR][1000 genomes]
rs62253388	1.00[EUR][1000 genomes]
rs62253391	1.00[EUR][1000 genomes]
rs62253392	1.00[EUR][1000 genomes]
rs62253415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62253416	1.00[EUR][1000 genomes]
rs62253417	1.00[EUR][1000 genomes]
rs62253418	1.00[EUR][1000 genomes]
rs62255309	1.00[EUR][1000 genomes]
rs62255353	1.00[EUR][1000 genomes]
rs6550832	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7641207	1.00[AMR][1000 genomes]
rs9812887	1.00[AMR][1000 genomes]
rs9839486	1.00[AMR][1000 genomes]
rs9857200	1.00[AMR][1000 genomes]
rs9864517	1.00[AMR][1000 genomes]
rs9985251	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24046400-24060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:24051800-24055000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:24051800-24055000	Enhancers	NHEK	skin
4	chr3:24053400-24054200	Weak transcription	HMEC	breast
5	chr3:24053600-24054600	Enhancers	Hela-S3	cervix
6	chr3:24053600-24065000	Weak transcription	Psoas Muscle	Psoas
7	chr3:24053800-24054400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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