Variant report

Variant	rs62253416
Chromosome Location	chr3:24061322-24061323
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13326515	1.00[EUR][1000 genomes]
rs62253360	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62253381	1.00[AFR][1000 genomes]
rs62253386	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62253388	1.00[EUR][1000 genomes]
rs62253391	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62253392	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62253414	1.00[EUR][1000 genomes]
rs62253415	1.00[EUR][1000 genomes]
rs62253417	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62253418	1.00[EUR][1000 genomes]
rs62255353	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24053600-24065000	Weak transcription	Psoas Muscle	Psoas
2	chr3:24058600-24064800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:24060200-24062000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:24060400-24061600	Enhancers	Gastric	stomach
5	chr3:24060600-24061600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:24060800-24061400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:24060800-24061400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:24060800-24062000	Enhancers	Esophagus	oesophagus
9	chr3:24061000-24061800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:24061000-24069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:24061200-24061600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links