Variant report

Variant	rs62265103
Chromosome Location	chr3:112784098-112784099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55844741	0.93[ASN][1000 genomes]
rs62265102	0.86[EUR][1000 genomes]
rs62265108	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62265110	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112770200-112784400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:112770600-112784200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:112770600-112784400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:112770800-112787400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:112771000-112784200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
8	chr3:112771200-112788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:112776600-112789000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:112779200-112784400	Strong transcription	Primary T cells from cord blood	blood
11	chr3:112779400-112784400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:112780000-112784200	Weak transcription	Gastric	stomach
13	chr3:112782600-112784200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:112782800-112784200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:112782800-112784400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:112782800-112784400	Weak transcription	Left Ventricle	heart
17	chr3:112782800-112788400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:112783000-112784200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:112783000-112784400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:112783200-112784400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr3:112783400-112788400	Weak transcription	Fetal Stomach	stomach
22	chr3:112783600-112784600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr3:112783600-112787200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:112783800-112784600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:112784000-112785000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr3:112784000-112786600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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