Variant report

Variant	rs62265108
Chromosome Location	chr3:112798387-112798388
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1920078	0.82[EUR][1000 genomes]
rs4146775	0.82[EUR][1000 genomes]
rs55844741	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59219292	0.82[EUR][1000 genomes]
rs62265101	1.00[AFR][1000 genomes]
rs62265102	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62265103	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62265110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
2	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:112790400-112798400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:112792200-112807000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:112798000-112798400	Enhancers	Fetal Stomach	stomach
6	chr3:112798000-112798600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:112798000-112799200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:112798000-112799200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr3:112798200-112798400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:112798200-112798400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:112798200-112798400	Enhancers	Brain Germinal Matrix	brain
12	chr3:112798200-112798400	Enhancers	Fetal Lung	lung
13	chr3:112798200-112798400	Flanking Active TSS	NH-A	brain
14	chr3:112798200-112798400	Active TSS	Osteobl	bone
15	chr3:112798200-112798600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:112798200-112798600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:112798200-112798600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr3:112798200-112798600	Active TSS	Brain Anterior Caudate	brain
19	chr3:112798200-112798600	Active TSS	Brain Substantia Nigra	brain
20	chr3:112798200-112798800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:112798200-112798800	Active TSS	Brain Angular Gyrus	brain
22	chr3:112798200-112798800	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr3:112798200-112798800	Active TSS	Right Atrium	heart
24	chr3:112798200-112799000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:112798200-112799000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:112798200-112799000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr3:112798200-112799000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:112798200-112799000	Active TSS	Brain Hippocampus Middle	brain
29	chr3:112798200-112799000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:112798200-112799000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr3:112798200-112799200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:112798200-112799200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:112798200-112799200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr3:112798200-112799200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr3:112798200-112799200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr3:112798200-112799200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:112798200-112799200	Active TSS	Stomach Smooth Muscle	stomach
38	chr3:112798200-112799200	Flanking Active TSS	GM12878-XiMat	blood

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