Variant report

Variant	rs62267972
Chromosome Location	chr3:139989988-139989989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55909253	0.93[EUR][1000 genomes]
rs56137512	0.93[EUR][1000 genomes]
rs56156172	1.00[EUR][1000 genomes]
rs56248764	1.00[EUR][1000 genomes]
rs62266224	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62266225	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62266226	0.85[EUR][1000 genomes]
rs62266258	1.00[EUR][1000 genomes]
rs62266259	1.00[EUR][1000 genomes]
rs62267961	1.00[EUR][1000 genomes]
rs62267962	1.00[EUR][1000 genomes]
rs62267963	1.00[EUR][1000 genomes]
rs62267964	1.00[EUR][1000 genomes]
rs62267965	1.00[EUR][1000 genomes]
rs62267997	0.93[EUR][1000 genomes]
rs62267999	0.93[EUR][1000 genomes]
rs62268001	0.93[EUR][1000 genomes]
rs6807041	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7640659	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139980200-139999400	Weak transcription	Pancreas	Pancrea
2	chr3:139984400-139992800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:139989000-139990000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:139989800-139992600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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