Variant report

Variant	rs6807041
Chromosome Location	chr3:139976617-139976618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139970372..139972823-chr3:139975471..139977910,2	MCF-7	breast:
2	chr3:139975949..139977666-chr3:139982168..139985039,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs4234484	0.83[TSI][hapmap]
rs55909253	0.93[EUR][1000 genomes]
rs56137512	0.93[EUR][1000 genomes]
rs56156172	1.00[EUR][1000 genomes]
rs56248764	1.00[EUR][1000 genomes]
rs62266224	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62266225	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62266226	0.85[EUR][1000 genomes]
rs62266258	1.00[EUR][1000 genomes]
rs62266259	1.00[EUR][1000 genomes]
rs62267961	1.00[EUR][1000 genomes]
rs62267962	1.00[EUR][1000 genomes]
rs62267963	1.00[EUR][1000 genomes]
rs62267964	1.00[EUR][1000 genomes]
rs62267965	1.00[EUR][1000 genomes]
rs62267972	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62267997	0.93[EUR][1000 genomes]
rs62267999	0.93[EUR][1000 genomes]
rs62268001	0.93[EUR][1000 genomes]
rs7640659	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139971600-139976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:139976000-139977800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:139976400-139977800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:139976400-139978000	Enhancers	HUVEC	blood vessel
5	chr3:139976600-139977400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:139976600-139977400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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