Variant report

Variant	rs62268906
Chromosome Location	chr3:76152269-76152270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11707316	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11918411	0.80[EUR][1000 genomes]
rs13314078	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28550059	0.84[AMR][1000 genomes]
rs28584856	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28621010	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28662945	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28736892	0.80[EUR][1000 genomes]
rs28766103	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28833184	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28863513	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60519416	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62267242	0.81[AMR][1000 genomes]
rs62267243	0.84[AMR][1000 genomes]
rs62267247	0.81[AMR][1000 genomes]
rs62267249	0.81[AMR][1000 genomes]
rs62268885	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62268886	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62268904	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62268905	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6805627	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73841082	0.83[AMR][1000 genomes]
rs9815763	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9823672	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9824142	0.81[AMR][1000 genomes]
rs9827302	0.81[EUR][1000 genomes]
rs9840793	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9851566	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9851838	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9874178	0.81[AMR][1000 genomes]
rs9880437	0.81[AMR][1000 genomes]
rs9990070	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1004976	chr3:76098108-76218646	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv963334	chr3:76144827-76201280	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76148600-76156000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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