Variant report

Variant	rs9815763
Chromosome Location	chr3:76144252-76144253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11707316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918411	0.80[EUR][1000 genomes]
rs13314078	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28550059	0.89[AMR][1000 genomes]
rs28584856	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28621010	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28662945	0.96[EUR][1000 genomes]
rs28736892	0.80[EUR][1000 genomes]
rs28766103	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28833184	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28863513	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60519416	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62267242	0.86[AMR][1000 genomes]
rs62267243	0.89[AMR][1000 genomes]
rs62267247	0.86[AMR][1000 genomes]
rs62267249	0.86[AMR][1000 genomes]
rs62267252	0.83[AMR][1000 genomes]
rs62268885	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62268886	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62268904	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62268905	0.87[EUR][1000 genomes]
rs62268906	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6805627	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73841082	0.89[AMR][1000 genomes]
rs9823672	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9824142	0.86[AMR][1000 genomes]
rs9827302	0.81[EUR][1000 genomes]
rs9840793	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9851566	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9851838	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9874178	0.86[AMR][1000 genomes]
rs9880437	0.86[AMR][1000 genomes]
rs9990070	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1004976	chr3:76098108-76218646	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv979771	chr3:76143057-76144827	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76143400-76146400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:76143600-76148000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:76143800-76145200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:76143800-76145200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:76143800-76146000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:76143800-76148400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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