The 2.0 version of rSNPBase

Variant report

Variant rs62274577
Chromosome Location chr3:100288436-100288437
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:100241000-100299800 Weak transcription Fetal Muscle Leg muscle
2 chr3:100253800-100289000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr3:100253800-100289000 Weak transcription Aorta Aorta
4 chr3:100265800-100300600 Weak transcription HepG2 liver
5 chr3:100270800-100291000 Weak transcription Colon Smooth Muscle Colon
6 chr3:100273400-100288600 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr3:100273400-100297000 Weak transcription Pancreas Pancrea
8 chr3:100276800-100309200 Weak transcription NH-A brain
9 chr3:100277200-100298000 Weak transcription Fetal Muscle Trunk muscle
10 chr3:100277600-100304200 Weak transcription Ovary ovary
11 chr3:100278200-100305800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr3:100280800-100289000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr3:100281200-100300200 Weak transcription Osteobl bone
14 chr3:100281600-100289200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr3:100282000-100291600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr3:100282400-100296800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr3:100282600-100289000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr3:100282800-100296800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr3:100283400-100298000 Weak transcription HSMMtube muscle
20 chr3:100283400-100300400 Weak transcription Muscle Satellite Cultured Cells --
21 chr3:100283600-100298400 Weak transcription HSMM muscle
22 chr3:100283800-100288600 Weak transcription Fetal Stomach stomach
23 chr3:100283800-100299800 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr3:100284600-100290400 Weak transcription Psoas Muscle Psoas
25 chr3:100287200-100290200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr3:100287400-100290200 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr3:100287600-100289800 Strong transcription Fetal Lung lung
28 chr3:100287600-100290200 Strong transcription Liver Liver
29 chr3:100287800-100289400 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr3:100287800-100290000 Strong transcription Placenta Amnion Placenta Amnion
31 chr3:100287800-100290200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr3:100287800-100290600 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr3:100288000-100297200 Weak transcription Fetal Intestine Large intestine
34 chr3:100288200-100298600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015