Variant report

Variant	rs9878163
Chromosome Location	chr3:100282658-100282659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100279404..100280905-chr3:100281627..100283276,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10755119	1.00[CHB][hapmap]
rs1143774	1.00[CHB][hapmap]
rs1144105	1.00[CHB][hapmap]
rs1144106	1.00[CHB][hapmap]
rs1144107	1.00[CHB][hapmap]
rs1144108	1.00[CHB][hapmap]
rs1144122	1.00[CHB][hapmap]
rs1144124	1.00[CHB][hapmap]
rs1144125	1.00[CHB][hapmap]
rs1144126	1.00[CHB][hapmap]
rs1145348	1.00[CHB][hapmap]
rs1165264	1.00[CHB][hapmap]
rs11921801	1.00[CHB][hapmap]
rs11921907	1.00[CHB][hapmap]
rs1676343	1.00[CHB][hapmap]
rs1718272	1.00[CHB][hapmap]
rs1718279	1.00[CHB][hapmap]
rs4088588	1.00[CHB][hapmap]
rs4129206	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144968	1.00[CHB][hapmap]
rs4928070	1.00[CHB][hapmap]
rs560803	1.00[CHB][hapmap]
rs586347	1.00[CHB][hapmap]
rs591728	1.00[CHB][hapmap]
rs610854	1.00[CHB][hapmap]
rs62274577	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274581	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274583	0.91[EUR][1000 genomes]
rs6441383	1.00[CHB][hapmap]
rs6441384	1.00[CHB][hapmap]
rs670008	1.00[CHB][hapmap]
rs6767460	1.00[CHB][hapmap]
rs6770559	1.00[CHB][hapmap]
rs6779489	1.00[CHB][hapmap]
rs6789364	1.00[CHB][hapmap]
rs7432653	0.81[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830133	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830764	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864288	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868719	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
4	chr3:100265800-100300600	Weak transcription	HepG2	liver
5	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:100273400-100288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
8	chr3:100276800-100309200	Weak transcription	NH-A	brain
9	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:100277600-100304200	Weak transcription	Ovary	ovary
11	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:100280000-100282800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:100280200-100283800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr3:100280800-100283200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:100280800-100289000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:100281000-100287800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:100281200-100300200	Weak transcription	Osteobl	bone
18	chr3:100281400-100282800	Enhancers	NHEK	skin
19	chr3:100281600-100287600	Weak transcription	Fetal Lung	lung
20	chr3:100281600-100289200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:100281800-100282800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:100281800-100282800	Enhancers	Fetal Heart	heart
23	chr3:100281800-100283600	Enhancers	HSMM	muscle
24	chr3:100281800-100287800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:100282000-100291600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:100282200-100283000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:100282200-100283000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr3:100282200-100283200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr3:100282200-100287600	Weak transcription	Liver	Liver
30	chr3:100282400-100283400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr3:100282400-100287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:100282400-100296800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:100282600-100282800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:100282600-100283400	Enhancers	HSMMtube	muscle
35	chr3:100282600-100283800	Strong transcription	Fetal Stomach	stomach
36	chr3:100282600-100287800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr3:100282600-100289000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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