Variant report

Variant	rs62274614
Chromosome Location	chr3:89159719-89159720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13316764	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13323078	0.93[AMR][1000 genomes]
rs62274613	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274619	0.81[AMR][1000 genomes]
rs9839323	0.93[AMR][1000 genomes]
rs9864261	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89156000-89159800	Active TSS	Stomach Smooth Muscle	stomach
2	chr3:89157600-89163000	Active TSS	Fetal Brain Female	brain
3	chr3:89157600-89163200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:89157600-89163200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:89157600-89163200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:89157600-89163400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:89157600-89163600	Weak transcription	Spleen	Spleen
8	chr3:89157800-89163000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:89158000-89163200	Weak transcription	Fetal Heart	heart
10	chr3:89158200-89162400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:89158200-89163000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:89159200-89159800	Active TSS	Brain Germinal Matrix	brain
13	chr3:89159200-89162800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:89159600-89160200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:89159600-89160800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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